PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052566.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 242aa    MW: 26741.8 Da    PI: 6.674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052566.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-0963110455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  EcC052566.10  63 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 110
                   8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1757127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-1157114No hitNo description
PROSITE profilePS5088815.66359109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1759126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-763110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1065115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
VSESHDNSSP KRCKPNEDDG NGNDTAKGED DAKGNSKKND AKPPEPPKDY IHVRARRGQA  60
TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL  120
ASVNTTLDFN ADTLMSKDMF QPNNSVPRPM FPLGSSATAF HGHHRPQTQP LPPPLQGHVS  180
SGAATQVEPL NLGPCHTVES HSPLNDLQYQ NFCGDDLQSI VQMSFGQNSN QETAFQLQTF  240
HG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036765.11e-177PREDICTED: transcription factor bHLH62-like
SwissprotQ9SRT23e-69BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A059A4Z61e-177A0A059A4Z6_EUCGR; Uncharacterized protein
STRINGPOPTR_0002s24990.17e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-69bHLH family protein